Akt inhibitor-IV in estrogen receptor-positive breast cancer cells: cytotoxic, apoptotic, transcriptional, and in-silico comparison with tamoxifen

dc.contributor.authorKarakuş, Ahmet
dc.contributor.authorErdoğan, Orhan
dc.contributor.authorKarakuş, Ahmet
dc.contributor.otherFen Fakültesi, Biyoteknoloji Bölümü
dc.date.accessioned2026-09-25T07:34:08Z
dc.date.created2026
dc.date.issued2026
dc.departmentFakülteler, Fen Fakültesi, Biyoteknoloji Bölümü
dc.description.abstractDysregulation of the phosphoinositide 3-kinase/protein kinase B (AKT)/mechanistic target of rapamycin pathway is a hallmark of breast cancer, making AKT a focus of therapeutic interest. AKT inhibitor-IV is a benzimidazolium compound that inhibits AKT phosphorylation, but its activity and binding mechanism in breast cancer cells have not been characterized in detail. We compared AKT inhibitor-IV with tamoxifen in MCF-7 cells. Cell viability after 24-h treatment was measured by 3-[4, 5-dimethylthiazol-2-yl]-2, 5 diphenyl tetrazolium bromide assay (AKT inhibitor-IV: 0.1–5 μM; tamoxifen: 5–50 μM); apoptotic death was quantified by nucleosome ELISA; and AKT1, BCL-2, BAX, and CASP3 mRNA levels were measured by quantitative real-time PCR. Both compounds were docked into the ATP-binding pockets of 3-phosphoinositide-dependent protein kinase-1 (PDK1) (PDB 1H1W) and AKT1 (PDB 3MVH) using AutoDock Vina v1.2.6. AKT inhibitor-IV reduced viability with an IC50 of 1.1 μM, compared with 5.2 μM for tamoxifen, and induced 5.9-fold apoptosis enrichment versus 3.65-fold for tamoxifen. AKT inhibitor-IV downregulated AKT1 (0.32-fold) and BCL-2 (0.55-fold) and upregulated BAX (5.97-fold) and CASP3 (6.43-fold) mRNA; tamoxifen showed qualitatively similar but quantitatively weaker transcriptional changes. Docking returned affinities of −9.91 kcal/mol for PDK1 and −9.66 kcal/mol for AKT1, with AKT inhibitor-IV contacting catalytic-core residues of both kinases. AKT inhibitor-IV was more potent than tamoxifen in this in-vitro setting and warrants further preclinical evaluation. Because MCF-7 cells carry the CASP3 exon 3 deletion and lack functional caspase-3 protein, the observed CASP3 mRNA upregulation reflects transcriptional reprogramming rather than restored executioner activity. The modest docking difference requires biochemical confirmation before any PDK1-versus-AKT1 selectivity claim can be established.
dc.identifier.citationKarakuş, A., & Erdoğan, O. (2026). Akt inhibitor-IV in estrogen receptor-positive breast cancer cells: cytotoxic, apoptotic, transcriptional, and in-silico comparison with tamoxifenAnti-Cancer Drugs https://doi.org/10.1097/CAD.0000000000001834
dc.identifier.doi10.1097/CAD.0000000000001834
dc.identifier.issn0959-4973
dc.identifier.orcidhttps://orcid.org/0000-0003-1458-808X
dc.identifier.pmid42390376
dc.identifier.scopus2-s2.0-105048782923
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.1097/CAD.0000000000001834
dc.identifier.urihttps://hdl.handle.net/11772/28044
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherLippincott Williams and Wilkins
dc.relation.ispartofAnti-Cancer Drugs
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.relation.sdgGoal-03: Good Health and Well-Being
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectAKT inhibitor-IV
dc.subjectApoptosis
dc.subjectBreast cancer
dc.subjectCytotoxicity
dc.subjectMolecular docking
dc.subjectPhosphoinositide 3-kinase/protein kinase B/mechanistic target of rapamycin pathway
dc.subjectTamoxifen
dc.subjectAKT inhibitörü-IV
dc.subjectApoptoz
dc.subjectMeme kanseri
dc.subjectSitotoksisite
dc.subjectMoleküler kenetlenme
dc.subjectFosfoinozitid 3-kinaz/protein kinaz B/rapamisinin mekanistik hedefi yolağı
dc.subjectTamoksifen
dc.titleAkt inhibitor-IV in estrogen receptor-positive breast cancer cells: cytotoxic, apoptotic, transcriptional, and in-silico comparison with tamoxifen
dc.typeArticle
dspace.entity.typePublication
relation.isAuthorOfPublicationb953de7f-9d9a-40f9-a0bb-99caa8d38af2
relation.isAuthorOfPublication.latestForDiscoveryb953de7f-9d9a-40f9-a0bb-99caa8d38af2
relation.isOrgUnitOfPublication26d2cfa4-ade2-42cc-bd0e-b1e2292e2b42
relation.isOrgUnitOfPublication.latestForDiscovery26d2cfa4-ade2-42cc-bd0e-b1e2292e2b42

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